IL_8OEQ_372

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_372 not in the Motif Atlas

Homologous match to IL_8C3A_471

Geometric discrepancy: 0.0497

The information below is about IL_8C3A_471

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

8OEQ|1|B|G|1625
8OEQ|1|B|C|1626
8OEQ|1|B|C|1627
8OEQ|1|B|C|1628
*
8OEQ|1|B|G|1747
8OEQ|1|B|U|1748
8OEQ|1|B|A|1749
8OEQ|1|B|A|1750
8OEQ|1|B|C|1751

Current chains

Chain B

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AO

60S ribosomal protein L41

Chain i

60S ribosomal protein CAALFM_C304810CA