IL_8OEQ_384

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

8OEQ|1|CM|A|466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_384 not in the Motif Atlas

Homologous match to IL_8C3A_394

Geometric discrepancy: 0.043

The information below is about IL_8C3A_394

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_30569.1

Basepair signature

cWW-cWW-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8OEQ|1|CM|U|37
8OEQ|1|CM|C|38
8OEQ|1|CM|A|39
8OEQ|1|CM|A|40
8OEQ|1|CM|A|41
*
8OEQ|1|CM|U|464
8OEQ|1|CM|G|465
8OEQ|1|CM|A|466
8OEQ|1|CM|C|467
8OEQ|1|CM|A|468
8OEQ|1|CM|A|469

Current chains

Chain CM

18S ribosomal RNA

Nearby chains

Chain CR

40S ribosomal protein S4

Chain CW

Ribosomal protein S4

Chain DL

40S ribosomal protein S24