IL_8OEQ_397

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AAUC*GAU

Length

7 nucleotides

Bulged bases

8OEQ|1|CM|A|264

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_397 not in the Motif Atlas

Homologous match to IL_8C3A_407

Geometric discrepancy: 0.0482

The information below is about IL_8C3A_407

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

49

Unit IDs

8OEQ|1|CM|A|263
8OEQ|1|CM|A|264
8OEQ|1|CM|U|265
8OEQ|1|CM|C|266
*
8OEQ|1|CM|G|285
8OEQ|1|CM|A|286
8OEQ|1|CM|U|287

Current chains

Chain CM

18S ribosomal RNA

Nearby chains

Chain CR

40S ribosomal protein S4

Chain CT

40S ribosomal protein S6