IL_8OEQ_410
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_410 not in the Motif Atlas
- Homologous match to IL_8C3A_423
- Geometric discrepancy: 0.0378
- The information below is about IL_8C3A_423
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.2
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
8OEQ|1|CM|A|548
8OEQ|1|CM|G|549
8OEQ|1|CM|G|550
8OEQ|1|CM|G|551
8OEQ|1|CM|C|552
8OEQ|1|CM|A|553
8OEQ|1|CM|A|554
8OEQ|1|CM|G|555
*
8OEQ|1|CM|C|585
8OEQ|1|CM|U|586
Current chains
- Chain CM
- 18S ribosomal RNA
Nearby chains
- Chain CL
- 60S ribosomal protein CAALFM_C304810CA
- Chain CP
- Ribosomal protein S5
- Chain CW
- Ribosomal protein S4
- Chain DR
- 40S ribosomal protein S30
Coloring options: