IL_8OEQ_415
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_415 not in the Motif Atlas
- Homologous match to IL_8C3A_428
- Geometric discrepancy: 0.0384
- The information below is about IL_8C3A_428
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.5
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8OEQ|1|CM|C|625
8OEQ|1|CM|G|626
8OEQ|1|CM|U|627
8OEQ|1|CM|A|628
8OEQ|1|CM|G|629
*
8OEQ|1|CM|U|953
8OEQ|1|CM|C|954
8OEQ|1|CM|A|955
8OEQ|1|CM|A|956
8OEQ|1|CM|G|957
Current chains
- Chain CM
- 18S ribosomal RNA
Nearby chains
- Chain AS
- Large subunit ribosomal RNA; LSU rRNA
- Chain CY
- 40S ribosomal protein S11A
- Chain DA
- 40S ribosomal protein S13
- Chain DJ
- 40S ribosomal protein S22-A
- Chain DK
- Ribosomal protein S23 (S12)
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