IL_8OEQ_416

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_416 not in the Motif Atlas

Homologous match to IL_8C3A_430

Geometric discrepancy: 0.0686

The information below is about IL_8C3A_430

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

8OEQ|1|CM|A|731
8OEQ|1|CM|C|732
*
8OEQ|1|CM|G|786
8OEQ|1|CM|A|787
8OEQ|1|CM|A|788
8OEQ|1|CM|U|789

Current chains

Chain CM

18S ribosomal RNA

Nearby chains

Chain CU

40S ribosomal protein S7

Chain CY

40S ribosomal protein S11A

Chain DJ

40S ribosomal protein S22-A

Chain DK

Ribosomal protein S23 (S12)