IL_8OEQ_421

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_421 not in the Motif Atlas

Homologous match to IL_8C3A_437

Geometric discrepancy: 0.0485

The information below is about IL_8C3A_437

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

8OEQ|1|CM|G|856
8OEQ|1|CM|G|857
8OEQ|1|CM|U|858
8OEQ|1|CM|C|859
*
8OEQ|1|CM|G|938
8OEQ|1|CM|G|939
8OEQ|1|CM|A|940
8OEQ|1|CM|C|941

Current chains

Chain CM

18S ribosomal RNA

Nearby chains

Chain CO

40S ribosomal protein S1

Chain DA

40S ribosomal protein S13

Chain DO

40S ribosomal protein S27