IL_8OEQ_444

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_444 not in the Motif Atlas

Homologous match to IL_8C3A_459

Geometric discrepancy: 0.0631

The information below is about IL_8C3A_459

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_63702.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

13

Unit IDs

8OEQ|1|CM|U|1275
8OEQ|1|CM|G|1276
8OEQ|1|CM|G|1277
*
8OEQ|1|CM|C|1308
8OEQ|1|CM|G|1309
8OEQ|1|CM|A|1310

Current chains

Chain CM

18S ribosomal RNA

Nearby chains

Chain CN

40S ribosomal protein S0

Chain CP

Ribosomal protein S5

Chain DE

40S ribosomal protein S17-B