IL_8OEQ_446
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUACU*AGAG
- Length
- 9 nucleotides
- Bulged bases
- 8OEQ|1|CM|U|1325
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_446 not in the Motif Atlas
- Homologous match to IL_8C3A_461
- Geometric discrepancy: 0.0955
- The information below is about IL_8C3A_461
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_13404.1
- Basepair signature
- cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
8OEQ|1|CM|C|1324
8OEQ|1|CM|U|1325
8OEQ|1|CM|A|1326
8OEQ|1|CM|C|1327
8OEQ|1|CM|U|1328
*
8OEQ|1|CM|A|1368
8OEQ|1|CM|G|1369
8OEQ|1|CM|A|1370
8OEQ|1|CM|G|1371
Current chains
- Chain CM
- 18S ribosomal RNA
Nearby chains
- Chain DD
- 40S ribosomal protein S16
- Chain DE
- 40S ribosomal protein S17-B
- Chain DH
- Ribosomal protein S10
- Chain DT
- Guanine nucleotide-binding protein subunit beta-like protein
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