IL_8OEQ_457

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UAC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_457 not in the Motif Atlas

Homologous match to IL_8C3A_474

Geometric discrepancy: 0.0428

The information below is about IL_8C3A_474

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_63702.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

13

Unit IDs

8OEQ|1|CM|U|1637
8OEQ|1|CM|A|1638
8OEQ|1|CM|C|1639
*
8OEQ|1|CM|G|1735
8OEQ|1|CM|A|1736
8OEQ|1|CM|A|1737

Current chains

Chain CM

18S ribosomal RNA

Nearby chains

Chain AS

Large subunit ribosomal RNA; LSU rRNA

Chain CI

60S ribosomal protein L41

Chain DK

Ribosomal protein S23 (S12)