IL_8OH6_054
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8OH6|1|1|C|1192, 8OH6|1|1|A|1298, 8OH6|1|1|U|1301, 8OH6|1|1|G|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_054 not in the Motif Atlas
- Homologous match to IL_8C3A_055
- Geometric discrepancy: 0.0433
- The information below is about IL_8C3A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8OH6|1|1|G|1190
8OH6|1|1|A|1191
8OH6|1|1|C|1192
8OH6|1|1|A|1193
8OH6|1|1|C|1194
8OH6|1|1|C|1195
8OH6|1|1|A|1196
8OH6|1|1|C|1197
8OH6|1|1|A|1198
8OH6|1|1|A|1199
8OH6|1|1|A|1200
8OH6|1|1|A|1201
*
8OH6|1|1|U|1295
8OH6|1|1|G|1296
8OH6|1|1|A|1297
8OH6|1|1|A|1298
8OH6|1|1|A|1299
8OH6|1|1|A|1300
8OH6|1|1|U|1301
8OH6|1|1|G|1302
8OH6|1|1|G|1303
8OH6|1|1|A|1304
8OH6|1|1|U|1305
8OH6|1|1|G|1306
8OH6|1|1|G|1307
8OH6|1|1|C|1308
8OH6|1|1|G|1309
8OH6|1|1|C|1310
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain AG
- 60S ribosomal protein L33-A
- Chain AN
- 60S ribosomal protein L40-B
- Chain k
- 60S ribosomal protein L3
- Chain o
- 60S ribosomal protein L7-A
- Chain r
- 60S ribosomal protein L10
- Chain w
- Ribosomal protein L13
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