IL_8OH6_092
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- UCAAAGU*AACCAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_092 not in the Motif Atlas
- Homologous match to IL_8C3A_093
- Geometric discrepancy: 0.0566
- The information below is about IL_8C3A_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8OH6|1|1|U|2189
8OH6|1|1|C|2190
8OH6|1|1|A|2191
8OH6|1|1|A|2192
8OH6|1|1|A|2193
8OH6|1|1|G|2194
8OH6|1|1|U|2195
*
8OH6|1|1|A|2206
8OH6|1|1|A|2207
8OH6|1|1|C|2208
8OH6|1|1|C|2209
8OH6|1|1|A|2210
8OH6|1|1|A|2211
8OH6|1|1|G|2212
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain AJ
- 60S ribosomal protein L36
- Chain AP
- 60S ribosomal protein L42-B
Coloring options: