IL_8OH6_100
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CAUGG*UAUAG
- Length
- 10 nucleotides
- Bulged bases
- 8OH6|1|1|A|2480
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_100 not in the Motif Atlas
- Homologous match to IL_8C3A_102
- Geometric discrepancy: 0.3018
- The information below is about IL_8C3A_102
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_90170.1
- Basepair signature
- cWW-L-R-L-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8OH6|1|1|C|2422
8OH6|1|1|A|2423
8OH6|1|1|U|2424
8OH6|1|1|G|2425
8OH6|1|1|G|2426
*
8OH6|1|1|U|2477
8OH6|1|1|A|2478
8OH6|1|1|U|2479
8OH6|1|1|A|2480
8OH6|1|1|G|2481
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain AJ
- 60S ribosomal protein L36
- Chain p
- 60S ribosomal protein L8
Coloring options: