IL_8OH6_140

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

8OH6|1|1|U|3319, 8OH6|1|1|U|3320

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_140 not in the Motif Atlas

Homologous match to IL_8P9A_363

Geometric discrepancy: 0.1091

The information below is about IL_8P9A_363

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

8OH6|1|1|C|3314
8OH6|1|1|C|3315
*
8OH6|1|1|G|3318
8OH6|1|1|U|3319
8OH6|1|1|U|3320
8OH6|1|1|G|3321

Current chains

Chain 1

25S (gene name XR_002086444.1)

Nearby chains

Chain K

40S ribosomal protein S8