IL_8OH6_145
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- UCCCC*GAUCA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_145 not in the Motif Atlas
- Homologous match to IL_8C3A_147
- Geometric discrepancy: 0.0532
- The information below is about IL_8C3A_147
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.10
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
8OH6|1|3|U|32
8OH6|1|3|C|33
8OH6|1|3|C|34
8OH6|1|3|C|35
8OH6|1|3|C|36
*
8OH6|1|3|G|41
8OH6|1|3|A|42
8OH6|1|3|U|43
8OH6|1|3|C|44
8OH6|1|3|A|45
Current chains
- Chain 3
- 5S
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain m
- Uncharacterized protein CaJ7.0206
- Chain s
- 60S ribosomal protein L11-B
Coloring options: