RNA 3D Hub //

Motif IL_58103.10 Version IL_58103.10 of this group appears in releases 3.91 to 3.94

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-31-104-105-66-9
1 IL_1MJI_0041MJI0.73680Symmetric double minor groove platformD5S rRNA fragmentA34C35C36C37C38*G44A45A46C47U48ncSHcWWcWScWWtSW
2 IL_7A0S_1137A0S0.41220Y 5S rRNAA36C37C38C39C40*G46A47A48C49U50ncSHncWWcWW
3 IL_5J7L_3585J7L0.22820Symmetric double minor groove platformDB 5S rRNAA34C35C36C37C38*G44A45A46C47U48ncSHcWWcWScWWtSW
4 IL_5NS3_0025NS30.10600Symmetric double minor groove platformCdouble-stranded RNAA34C35C36C37C38*G44A45A46C47U48ncSHcWWcWScWWtSW
5 IL_4V9F_1044V9F0.00000Symmetric double minor groove platform9 5S rRNAU33A34C35C36C37*G43A44A45C46A47cSHcWWcWScWWtSW
6 IL_9DFE_1139DFE0.110101B 5S rRNAU34U35C36C37C38*G44A45A46C47A48ncSHcWWcWScWWtSW
7 IL_8C3A_1478C3A0.169803 5S rRNAU32C33C34C35C36*G41A42U43C44A45ncSHcWWcWScWWtSW
8 IL_8P9A_3688P9A0.17370Symmetric double minor groove platform (H)AS 5S rRNAU32U33C34C35C36*G41A42U43C44A45ncSHcWWcWScWWtSW
9 IL_4WF9_1154WF90.21160Symmetric double minor groove platformY 5S rRNAU32U33C34C35C36*G42A43A44C45A46cWWncWScWWntSW

3D structures

Complete motif including flanking bases
SequenceCounts
ACCCC*GAACU4
UUCCC*GAACA2
UACCC*GAACA1
UCCCC*GAUCA1
UUCCC*GAUCA1
Non-Watson-Crick part of the motif
SequenceCounts
CCC*AAC4
UCC*AAC2
ACC*AAC1
CCC*AUC1
UCC*AUC1

Release history

Release3.913.923.933.94
Date2024-12-042025-01-012025-01-292025-02-26
StatusUpdated, 1 parentExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Symmetric double minor groove platform (5)
  • (3)
  • Symmetric double minor groove platform (H) (1)
    • Basepair signature
    cWW-cSH-cWS-L-tSW-R-R-cWW
    Heat map statistics
    Min 0.08 | Avg 0.33 | Max 0.83
    Help

    Coloring options:

    IL_1MJI_004:IL_1MJI_004 = 0IL_1MJI_004:IL_7A0S_113 = 0.7101IL_1MJI_004:IL_5J7L_358 = 0.6546IL_1MJI_004:IL_5NS3_002 = 0.7592IL_1MJI_004:IL_4V9F_104 = 0.7368IL_1MJI_004:IL_9DFE_113 = 0.7763IL_1MJI_004:IL_8C3A_147 = 0.7896IL_1MJI_004:IL_8P9A_368 = 0.8001IL_1MJI_004:IL_4WF9_115 = 0.8294IL_7A0S_113:IL_1MJI_004 = 0.7101IL_7A0S_113:IL_7A0S_113 = 0IL_7A0S_113:IL_5J7L_358 = 0.2542IL_7A0S_113:IL_5NS3_002 = 0.4226IL_7A0S_113:IL_4V9F_104 = 0.4122IL_7A0S_113:IL_9DFE_113 = 0.4329IL_7A0S_113:IL_8C3A_147 = 0.4689IL_7A0S_113:IL_8P9A_368 = 0.4783IL_7A0S_113:IL_4WF9_115 = 0.4931IL_5J7L_358:IL_1MJI_004 = 0.6546IL_5J7L_358:IL_7A0S_113 = 0.2542IL_5J7L_358:IL_5J7L_358 = 0IL_5J7L_358:IL_5NS3_002 = 0.255IL_5J7L_358:IL_4V9F_104 = 0.2282IL_5J7L_358:IL_9DFE_113 = 0.2638IL_5J7L_358:IL_8C3A_147 = 0.303IL_5J7L_358:IL_8P9A_368 = 0.3136IL_5J7L_358:IL_4WF9_115 = 0.3598IL_5NS3_002:IL_1MJI_004 = 0.7592IL_5NS3_002:IL_7A0S_113 = 0.4226IL_5NS3_002:IL_5J7L_358 = 0.255IL_5NS3_002:IL_5NS3_002 = 0IL_5NS3_002:IL_4V9F_104 = 0.106IL_5NS3_002:IL_9DFE_113 = 0.1453IL_5NS3_002:IL_8C3A_147 = 0.1761IL_5NS3_002:IL_8P9A_368 = 0.1801IL_5NS3_002:IL_4WF9_115 = 0.2112IL_4V9F_104:IL_1MJI_004 = 0.7368IL_4V9F_104:IL_7A0S_113 = 0.4122IL_4V9F_104:IL_5J7L_358 = 0.2282IL_4V9F_104:IL_5NS3_002 = 0.106IL_4V9F_104:IL_4V9F_104 = 0IL_4V9F_104:IL_9DFE_113 = 0.1101IL_4V9F_104:IL_8C3A_147 = 0.1698IL_4V9F_104:IL_8P9A_368 = 0.1737IL_4V9F_104:IL_4WF9_115 = 0.2116IL_9DFE_113:IL_1MJI_004 = 0.7763IL_9DFE_113:IL_7A0S_113 = 0.4329IL_9DFE_113:IL_5J7L_358 = 0.2638IL_9DFE_113:IL_5NS3_002 = 0.1453IL_9DFE_113:IL_4V9F_104 = 0.1101IL_9DFE_113:IL_9DFE_113 = 0IL_9DFE_113:IL_8C3A_147 = 0.1731IL_9DFE_113:IL_8P9A_368 = 0.1873IL_9DFE_113:IL_4WF9_115 = 0.2313IL_8C3A_147:IL_1MJI_004 = 0.7896IL_8C3A_147:IL_7A0S_113 = 0.4689IL_8C3A_147:IL_5J7L_358 = 0.303IL_8C3A_147:IL_5NS3_002 = 0.1761IL_8C3A_147:IL_4V9F_104 = 0.1698IL_8C3A_147:IL_9DFE_113 = 0.1731IL_8C3A_147:IL_8C3A_147 = 0IL_8C3A_147:IL_8P9A_368 = 0.0835IL_8C3A_147:IL_4WF9_115 = 0.2688IL_8P9A_368:IL_1MJI_004 = 0.8001IL_8P9A_368:IL_7A0S_113 = 0.4783IL_8P9A_368:IL_5J7L_358 = 0.3136IL_8P9A_368:IL_5NS3_002 = 0.1801IL_8P9A_368:IL_4V9F_104 = 0.1737IL_8P9A_368:IL_9DFE_113 = 0.1873IL_8P9A_368:IL_8C3A_147 = 0.0835IL_8P9A_368:IL_8P9A_368 = 0IL_8P9A_368:IL_4WF9_115 = 0.249IL_4WF9_115:IL_1MJI_004 = 0.8294IL_4WF9_115:IL_7A0S_113 = 0.4931IL_4WF9_115:IL_5J7L_358 = 0.3598IL_4WF9_115:IL_5NS3_002 = 0.2112IL_4WF9_115:IL_4V9F_104 = 0.2116IL_4WF9_115:IL_9DFE_113 = 0.2313IL_4WF9_115:IL_8C3A_147 = 0.2688IL_4WF9_115:IL_8P9A_368 = 0.249IL_4WF9_115:IL_4WF9_115 = 0IL_1MJI_004IL_7A0S_113IL_5J7L_358IL_5NS3_002IL_4V9F_104IL_9DFE_113IL_8C3A_147IL_8P9A_368IL_4WF9_115Discrepancy0.000.200.400.600.80
    Copyright 2025 BGSU RNA group. Page generated in 0.5962 s