Motif IL_58103.10 Version IL_58103.10 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-3 | 1-10 | 4-10 | 5-6 | 6-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1MJI_004 | 1MJI | 0.7368 | 0 | Symmetric double minor groove platform | D | 5S rRNA fragment | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | A | 45 | A | 46 | C | 47 | U | 48 | ncSH | cWW | cWS | cWW | tSW |
| 2 | IL_7A0S_113 | 7A0S | 0.4122 | 0 | Y | 5S rRNA | A | 36 | C | 37 | C | 38 | C | 39 | C | 40 | * | G | 46 | A | 47 | A | 48 | C | 49 | U | 50 | ncSH | ncWW | cWW | |||
| 3 | IL_5J7L_358 | 5J7L | 0.2282 | 0 | Symmetric double minor groove platform | DB | 5S rRNA | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | A | 45 | A | 46 | C | 47 | U | 48 | ncSH | cWW | cWS | cWW | tSW |
| 4 | IL_5NS3_002 | 5NS3 | 0.1060 | 0 | Symmetric double minor groove platform | C | double-stranded RNA | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | A | 45 | A | 46 | C | 47 | U | 48 | ncSH | cWW | cWS | cWW | tSW |
| 5 | IL_4V9F_104 | 4V9F | 0.0000 | 0 | Symmetric double minor groove platform | 9 | 5S rRNA | U | 33 | A | 34 | C | 35 | C | 36 | C | 37 | * | G | 43 | A | 44 | A | 45 | C | 46 | A | 47 | cSH | cWW | cWS | cWW | tSW |
| 6 | IL_9DFE_113 | 9DFE | 0.1101 | 0 | 1B | 5S rRNA | U | 34 | U | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | A | 45 | A | 46 | C | 47 | A | 48 | ncSH | cWW | cWS | cWW | tSW | |
| 7 | IL_8C3A_147 | 8C3A | 0.1698 | 0 | 3 | 5S rRNA | U | 32 | C | 33 | C | 34 | C | 35 | C | 36 | * | G | 41 | A | 42 | U | 43 | C | 44 | A | 45 | ncSH | cWW | cWS | cWW | tSW | |
| 8 | IL_8P9A_368 | 8P9A | 0.1737 | 0 | Symmetric double minor groove platform (H) | AS | 5S rRNA | U | 32 | U | 33 | C | 34 | C | 35 | C | 36 | * | G | 41 | A | 42 | U | 43 | C | 44 | A | 45 | ncSH | cWW | cWS | cWW | tSW |
| 9 | IL_4WF9_115 | 4WF9 | 0.2116 | 0 | Symmetric double minor groove platform | Y | 5S rRNA | U | 32 | U | 33 | C | 34 | C | 35 | C | 36 | * | G | 42 | A | 43 | A | 44 | C | 45 | A | 46 | cWW | ncWS | cWW | ntSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACCCC*GAACU | 4 |
| UUCCC*GAACA | 2 |
| UACCC*GAACA | 1 |
| UCCCC*GAUCA | 1 |
| UUCCC*GAUCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCC*AAC | 4 |
| UCC*AAC | 2 |
| ACC*AAC | 1 |
| CCC*AUC | 1 |
| UCC*AUC | 1 |
- Annotations
-
- Symmetric double minor groove platform (5)
- (3)
- Symmetric double minor groove platform (H) (1)
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Heat map statistics
- Min 0.08 | Avg 0.33 | Max 0.83
Coloring options: