IL_8OH6_172

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_172 not in the Motif Atlas

Homologous match to IL_8C3A_025

Geometric discrepancy: 0.0333

The information below is about IL_8C3A_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8OH6|1|AS|G|723
8OH6|1|AS|G|724
8OH6|1|AS|G|725
8OH6|1|AS|G|726
*
8OH6|1|AS|U|737
8OH6|1|AS|G|738
8OH6|1|AS|C|739
8OH6|1|AS|A|740
8OH6|1|AS|C|741

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain BL

60S ribosomal protein L18-A

Chain BW

60S ribosomal protein L29