IL_8OH6_177
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8OH6|1|AS|A|929, 8OH6|1|AS|G|933
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_177 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.0695
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8OH6|1|AS|G|801
8OH6|1|AS|A|802
8OH6|1|AS|A|803
8OH6|1|AS|A|804
8OH6|1|AS|G|805
*
8OH6|1|AS|C|927
8OH6|1|AS|U|928
8OH6|1|AS|A|929
8OH6|1|AS|G|930
8OH6|1|AS|U|931
8OH6|1|AS|A|932
8OH6|1|AS|G|933
8OH6|1|AS|C|934
Current chains
- Chain AS
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain AY
- 60S ribosomal protein L4-B
- Chain BG
- 60S ribosomal protein L13
- Chain BI
- 60S ribosomal protein L15-A
- Chain BV
- 60S ribosomal protein L28
- Chain CE
- 60S ribosomal protein L37-B
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