IL_8OH6_205
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CGU*AGUG
- Length
- 7 nucleotides
- Bulged bases
- 8OH6|1|AS|G|1425
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_205 not in the Motif Atlas
- Homologous match to IL_8C3A_061
- Geometric discrepancy: 0.0488
- The information below is about IL_8C3A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73554.3
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8OH6|1|AS|C|1372
8OH6|1|AS|G|1373
8OH6|1|AS|U|1374
*
8OH6|1|AS|A|1424
8OH6|1|AS|G|1425
8OH6|1|AS|U|1426
8OH6|1|AS|G|1427
Current chains
- Chain AS
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain AU
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AY
- 60S ribosomal protein L4-B
- Chain BV
- 60S ribosomal protein L28
- Chain BZ
- 60S ribosomal protein L32
Coloring options: