IL_8OH6_211
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CUAAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 8OH6|1|AS|A|1584, 8OH6|1|AS|A|1585
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_211 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.0734
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8OH6|1|AS|C|1528
8OH6|1|AS|U|1529
8OH6|1|AS|A|1530
8OH6|1|AS|A|1531
8OH6|1|AS|G|1532
*
8OH6|1|AS|C|1581
8OH6|1|AS|G|1582
8OH6|1|AS|A|1583
8OH6|1|AS|A|1584
8OH6|1|AS|A|1585
8OH6|1|AS|G|1586
Current chains
- Chain AS
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain AU
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AW
- 60S ribosomal protein L2-B
- Chain CB
- 60S ribosomal protein L34-B
- Chain CE
- 60S ribosomal protein L37-B
- Chain CG
- 60S ribosomal protein L39
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