IL_8OH6_213

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GAUA*UGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_213 not in the Motif Atlas

Homologous match to IL_8C3A_070

Geometric discrepancy: 0.0996

The information below is about IL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

8OH6|1|AS|G|1614
8OH6|1|AS|A|1615
8OH6|1|AS|U|1616
8OH6|1|AS|A|1617
*
8OH6|1|AS|U|1820
8OH6|1|AS|G|1821
8OH6|1|AS|C|1822

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain AU

5.8S ribosomal RNA; 5.8S rRNA

Chain CF

60S ribosomal protein L38