IL_8OH6_240

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8OH6|1|AS|A|2259, 8OH6|1|AS|C|2265, 8OH6|1|AS|C|2284

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_240 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.0626

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8OH6|1|AS|C|2255
8OH6|1|AS|C|2256
8OH6|1|AS|A|2257
8OH6|1|AS|A|2258
8OH6|1|AS|A|2259
8OH6|1|AS|U|2260
8OH6|1|AS|G|2261
8OH6|1|AS|C|2262
8OH6|1|AS|C|2263
8OH6|1|AS|U|2264
8OH6|1|AS|C|2265
8OH6|1|AS|G|2266
*
8OH6|1|AS|C|2282
8OH6|1|AS|G|2283
8OH6|1|AS|C|2284
8OH6|1|AS|G|2285

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain CI

60S ribosomal protein L41

Chain CM

Small subunit ribosomal RNA; SSU rRNA