IL_8OH6_256

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8OH6|1|AS|G|2917, 8OH6|1|AS|A|2918

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_256 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0511

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8OH6|1|AS|C|2851
8OH6|1|AS|U|2852
8OH6|1|AS|C|2853
*
8OH6|1|AS|G|2915
8OH6|1|AS|U|2916
8OH6|1|AS|G|2917
8OH6|1|AS|A|2918
8OH6|1|AS|G|2919

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain AX

60S ribosomal protein L3

Chain BQ

60S ribosomal protein L23-A