IL_8OH6_268

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

8OH6|1|AS|A|3102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_268 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.0766

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

8OH6|1|AS|A|3075
8OH6|1|AS|U|3076
8OH6|1|AS|U|3077
8OH6|1|AS|A|3078
8OH6|1|AS|U|3079
*
8OH6|1|AS|A|3099
8OH6|1|AS|G|3100
8OH6|1|AS|A|3101
8OH6|1|AS|A|3102
8OH6|1|AS|U|3103

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain BD

60S ribosomal protein L9-B

Chain BJ

Ribosomal protein L13

Chain CH

60S ribosomal protein L40-B