IL_8OH6_280

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_280 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.0637

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8OH6|1|AS|A|3307
8OH6|1|AS|G|3308
8OH6|1|AS|A|3309
8OH6|1|AS|G|3310
*
8OH6|1|AS|C|3325
8OH6|1|AS|G|3326
8OH6|1|AS|A|3327
8OH6|1|AS|U|3328

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain BM

60S ribosomal protein L19-A

Chain BP

60S ribosomal protein L22-B

Chain CV

40S ribosomal protein S8