IL_8OH6_293

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

8OH6|1|B|A|466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_293 not in the Motif Atlas

Homologous match to IL_8C3A_394

Geometric discrepancy: 0.0651

The information below is about IL_8C3A_394

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_30569.1

Basepair signature

cWW-cWW-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8OH6|1|B|U|37
8OH6|1|B|C|38
8OH6|1|B|A|39
8OH6|1|B|A|40
8OH6|1|B|A|41
*
8OH6|1|B|U|464
8OH6|1|B|G|465
8OH6|1|B|A|466
8OH6|1|B|C|467
8OH6|1|B|A|468
8OH6|1|B|A|469

Current chains

Chain B

18S

Nearby chains

Chain G

40S ribosomal protein S4

Chain L

Ribosomal protein S4

Chain a

40S ribosomal protein S24