IL_8OH6_300
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- UUAUUU*AUUCA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_300 not in the Motif Atlas
- Homologous match to IL_8C3A_401
- Geometric discrepancy: 0.0515
- The information below is about IL_8C3A_401
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_02934.1
- Basepair signature
- cWW-L-R-L-cWW-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OH6|1|B|U|117
8OH6|1|B|U|118
8OH6|1|B|A|119
8OH6|1|B|U|120
8OH6|1|B|U|121
8OH6|1|B|U|122
*
8OH6|1|B|A|293
8OH6|1|B|U|294
8OH6|1|B|U|295
8OH6|1|B|C|296
8OH6|1|B|A|297
Current chains
- Chain B
- 18S
Nearby chains
- Chain G
- 40S ribosomal protein S4
- Chain K
- 40S ribosomal protein S8
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