IL_8OH6_301
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 8OH6|1|B|U|168
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_301 not in the Motif Atlas
- Homologous match to IL_8C3A_402
- Geometric discrepancy: 0.0514
- The information below is about IL_8C3A_402
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.4
- Basepair signature
- cWW-L-R-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
8OH6|1|B|G|141
8OH6|1|B|G|142
8OH6|1|B|A|143
8OH6|1|B|U|144
8OH6|1|B|A|145
8OH6|1|B|A|146
8OH6|1|B|C|147
*
8OH6|1|B|G|163
8OH6|1|B|C|164
8OH6|1|B|U|165
8OH6|1|B|A|166
8OH6|1|B|A|167
8OH6|1|B|U|168
8OH6|1|B|A|169
8OH6|1|B|C|170
Current chains
- Chain B
- 18S
Nearby chains
- Chain 7
- 60S ribosomal protein L24-A
- Chain I
- 40S ribosomal protein S6
- Chain a
- 40S ribosomal protein S24
Coloring options: