IL_8OH6_319
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_319 not in the Motif Atlas
- Homologous match to IL_8C3A_423
- Geometric discrepancy: 0.0481
- The information below is about IL_8C3A_423
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.2
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
8OH6|1|B|A|548
8OH6|1|B|G|549
8OH6|1|B|G|550
8OH6|1|B|G|551
8OH6|1|B|C|552
8OH6|1|B|A|553
8OH6|1|B|A|554
8OH6|1|B|G|555
*
8OH6|1|B|C|585
8OH6|1|B|U|586
Current chains
- Chain B
- 18S
Nearby chains
- Chain E
- Ribosomal protein S5
- Chain L
- Ribosomal protein S4
- Chain g
- 40S ribosomal protein S30
- Chain i
- 60S ribosomal protein CAALFM_C304810CA
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