IL_8OH6_337
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GGAU*GCAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_337 not in the Motif Atlas
- Homologous match to IL_8C3A_444
- Geometric discrepancy: 0.0662
- The information below is about IL_8C3A_444
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_54697.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 51
Unit IDs
8OH6|1|B|G|1026
8OH6|1|B|G|1027
8OH6|1|B|A|1028
8OH6|1|B|U|1029
*
8OH6|1|B|G|1059
8OH6|1|B|C|1060
8OH6|1|B|A|1061
8OH6|1|B|C|1062
Current chains
- Chain B
- 18S
Nearby chains
- Chain C
- 40S ribosomal protein S0
- Chain D
- 40S ribosomal protein S1
- Chain P
- 40S ribosomal protein S13
- Chain c
- 40S ribosomal protein S26
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