IL_8OH6_401

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

ACA*UU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_401 not in the Motif Atlas

Homologous match to IL_8C3A_422

Geometric discrepancy: 0.0608

The information below is about IL_8C3A_422

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58310.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8OH6|1|CM|A|516
8OH6|1|CM|C|517
8OH6|1|CM|A|518
*
8OH6|1|CM|U|530
8OH6|1|CM|U|531

Current chains

Chain CM

18S

Nearby chains

Chain CW

Ribosomal protein S4

Chain DL

40S ribosomal protein S24