IL_8OH6_437

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_437 not in the Motif Atlas

Homologous match to IL_8C3A_460

Geometric discrepancy: 0.0745

The information below is about IL_8C3A_460

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58310.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8OH6|1|CM|C|1291
8OH6|1|CM|U|1292
8OH6|1|CM|G|1293
*
8OH6|1|CM|C|1302
8OH6|1|CM|G|1303

Current chains

Chain CM

18S

Nearby chains

Chain DE

40S ribosomal protein S17-B

Chain DN

40S ribosomal protein S26