IL_8OH6_456

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_456 not in the Motif Atlas

Homologous match to IL_8C3A_480

Geometric discrepancy: 0.0528

The information below is about IL_8C3A_480

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.1

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8OH6|1|CM|C|1665
8OH6|1|CM|G|1666
8OH6|1|CM|G|1667
8OH6|1|CM|A|1668
8OH6|1|CM|U|1669
*
8OH6|1|CM|A|1706
8OH6|1|CM|G|1707
8OH6|1|CM|A|1708
8OH6|1|CM|A|1709
8OH6|1|CM|G|1710

Current chains

Chain CM

18S

Nearby chains

Chain BR

60S ribosomal protein L24-A

Chain CT

40S ribosomal protein S6

Chain CV

40S ribosomal protein S8