IL_8OH6_458

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UACA*UAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_458 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3831

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.1

Basepair signature

cWW-L-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8OH6|1|B|U|480
8OH6|1|B|A|481
8OH6|1|B|C|482
8OH6|1|B|A|483
*
8OH6|1|B|U|502
8OH6|1|B|A|503
8OH6|1|B|A|504

Current chains

Chain B

18S

Nearby chains

Chain L

Ribosomal protein S4

Chain g

40S ribosomal protein S30