IL_8OHD_054
3D structure
- PDB id
- 8OHD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 8OHD|1|5|G|1625, 8OHD|1|5|A|1637, 8OHD|1|5|A|1638
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OHD_054 not in the Motif Atlas
- Homologous match to IL_8C3A_036
- Geometric discrepancy: 0.0992
- The information below is about IL_8C3A_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8OHD|1|5|G|1624
8OHD|1|5|G|1625
8OHD|1|5|G|1626
*
8OHD|1|5|U|1636
8OHD|1|5|A|1637
8OHD|1|5|A|1638
8OHD|1|5|U|1639
8OHD|1|5|C|1640
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LN
- 60S ribosomal protein L15
- Chain LP
- 60S ribosomal protein L17
- Chain Lj
- 60S ribosomal protein L37
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