IL_8OHD_117
3D structure
- PDB id
- 8OHD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUGUAGAAUAAG*UAC
- Length
- 16 nucleotides
- Bulged bases
- 8OHD|1|5|A|3965
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OHD_117 not in the Motif Atlas
- Geometric match to IL_5UNE_001
- Geometric discrepancy: 0.1683
- The information below is about IL_5UNE_001
- Detailed Annotation
- Isolated non-canonical cWW contact
- Broad Annotation
- No text annotation
- Motif group
- IL_87720.1
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
8OHD|1|5|G|3955
8OHD|1|5|G|3956
8OHD|1|5|U|3957
8OHD|1|5|G|3958
8OHD|1|5|U|3959
8OHD|1|5|A|3960
8OHD|1|5|G|3961
8OHD|1|5|A|3962
8OHD|1|5|A|3963
8OHD|1|5|U|3964
8OHD|1|5|A|3965
8OHD|1|5|A|3966
8OHD|1|5|G|3967
*
8OHD|1|5|U|4055
8OHD|1|5|A|4056
8OHD|1|5|C|4057
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain Lz
- 60S ribosomal protein L10a
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