IL_8OI5_005
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 8OI5|1|1|A|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OI5_005 not in the Motif Atlas
- Homologous match to IL_8P9A_234
- Geometric discrepancy: 0.0471
- The information below is about IL_8P9A_234
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84694.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8OI5|1|1|C|30
8OI5|1|1|U|31
8OI5|1|1|G|32
8OI5|1|1|A|33
8OI5|1|1|A|34
8OI5|1|1|C|35
8OI5|1|1|U|36
8OI5|1|1|U|37
*
8OI5|1|1|A|44
8OI5|1|1|U|45
8OI5|1|1|C|46
8OI5|1|1|A|47
8OI5|1|1|A|48
8OI5|1|1|U|49
8OI5|1|1|A|50
8OI5|1|1|A|51
8OI5|1|1|G|52
Current chains
- Chain 1
- 25S
Nearby chains
- Chain AB
- 60S ribosomal protein L28
- Chain AK
- 60S ribosomal protein L37-B
- Chain AP
- 60S ribosomal protein L42-B
- Chain t
- 60S ribosomal protein L13
- Chain v
- 60S ribosomal protein L15-A
Coloring options: