IL_8OI5_010

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UG*UGUGUA

Length

8 nucleotides

Bulged bases

8OI5|1|1|U|250, 8OI5|1|1|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_010 not in the Motif Atlas

Homologous match to IL_8C3A_010

Geometric discrepancy: 0.0856

The information below is about IL_8C3A_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33817.1

Basepair signature

cWW-R-L-L-L

Number of instances in this motif group

1

Unit IDs

8OI5|1|1|U|168
8OI5|1|1|G|169
*
8OI5|1|1|U|248
8OI5|1|1|G|249
8OI5|1|1|U|250
8OI5|1|1|G|251
8OI5|1|1|U|252
8OI5|1|1|A|253

Current chains

Chain 1

25S

Nearby chains

Chain AI

Ribosomal protein L29

Chain AY

60S ribosomal protein L4-B

Chain p

60S ribosomal protein L8

Chain t

60S ribosomal protein L13