IL_8OI5_046

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCUUG*UAA

Length

8 nucleotides

Bulged bases

8OI5|1|1|C|1011, 8OI5|1|1|U|1012, 8OI5|1|1|U|1013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_046 not in the Motif Atlas

Homologous match to IL_8C3A_508

Geometric discrepancy: 0.2005

The information below is about IL_8C3A_508

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07195.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8OI5|1|1|U|1010
8OI5|1|1|C|1011
8OI5|1|1|U|1012
8OI5|1|1|U|1013
8OI5|1|1|G|1014
*
8OI5|1|1|U|1030
8OI5|1|1|A|1031
8OI5|1|1|A|1032

Current chains

Chain 1

25S

Nearby chains

Chain i

60S ribosomal protein CAALFM_C304810CA

Chain m

Uncharacterized protein CaJ7.0206

Chain r

60S ribosomal protein L10