IL_8OI5_051

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUAAA*UUAUA

Length

10 nucleotides

Bulged bases

8OI5|1|1|U|1327

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

8OI5|1|1|U|1163
8OI5|1|1|U|1164
8OI5|1|1|A|1165
8OI5|1|1|A|1166
8OI5|1|1|A|1167
*
8OI5|1|1|U|1324
8OI5|1|1|U|1325
8OI5|1|1|A|1326
8OI5|1|1|U|1327
8OI5|1|1|A|1328

Current chains

Chain 1

25S

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain AF

60S ribosomal protein L32

Chain AG

60S ribosomal protein L33-A

Chain o

60S ribosomal protein L7-A

Chain y

60S ribosomal protein L18-A