IL_8OI5_065

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8OI5|1|1|U|1557

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_065 not in the Motif Atlas

Homologous match to IL_8C3A_068

Geometric discrepancy: 0.0611

The information below is about IL_8C3A_068

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8OI5|1|1|G|1556
8OI5|1|1|U|1557
8OI5|1|1|G|1558
*
8OI5|1|1|C|1573
8OI5|1|1|C|1574

Current chains

Chain 1

25S

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 8

60S ribosomal protein L25

Chain p

60S ribosomal protein L8