IL_8OI5_069
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAAU*AGGAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OI5_069 not in the Motif Atlas
- Homologous match to IL_8C3A_073
- Geometric discrepancy: 0.0633
- The information below is about IL_8C3A_073
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_95716.2
- Basepair signature
- cWW-cWW-tHS-tHS-tSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
8OI5|1|1|U|1641
8OI5|1|1|G|1642
8OI5|1|1|A|1643
8OI5|1|1|A|1644
8OI5|1|1|U|1645
*
8OI5|1|1|A|1802
8OI5|1|1|G|1803
8OI5|1|1|G|1804
8OI5|1|1|A|1805
8OI5|1|1|A|1806
Current chains
- Chain 1
- 25S
Nearby chains
- Chain AA
- 60S ribosomal protein L27
- Chain AH
- 60S ribosomal protein L34-B
- Chain j
- 60S ribosomal protein L2-B
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