IL_8OI5_071

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

8OI5|1|1|C|1775

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_071 not in the Motif Atlas

Homologous match to IL_8C3A_075

Geometric discrepancy: 0.0532

The information below is about IL_8C3A_075

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

8OI5|1|1|C|1665
8OI5|1|1|C|1666
*
8OI5|1|1|G|1774
8OI5|1|1|C|1775
8OI5|1|1|G|1776

Current chains

Chain 1

25S

Nearby chains

Chain AH

60S ribosomal protein L34-B

Chain z

60S ribosomal protein L19-A