IL_8OI5_085
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAUGG*UGUUGACA
- Length
- 14 nucleotides
- Bulged bases
- 8OI5|1|1|U|2137, 8OI5|1|1|U|2153, 8OI5|1|1|C|2157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OI5_085 not in the Motif Atlas
- Homologous match to IL_8C3A_088
- Geometric discrepancy: 0.0483
- The information below is about IL_8C3A_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OI5|1|1|U|2134
8OI5|1|1|G|2135
8OI5|1|1|A|2136
8OI5|1|1|U|2137
8OI5|1|1|G|2138
8OI5|1|1|G|2139
*
8OI5|1|1|U|2151
8OI5|1|1|G|2152
8OI5|1|1|U|2153
8OI5|1|1|U|2154
8OI5|1|1|G|2155
8OI5|1|1|A|2156
8OI5|1|1|C|2157
8OI5|1|1|A|2158
Current chains
- Chain 1
- 25S
Nearby chains
- Chain AQ
- 60S ribosomal protein L43-A
- Chain B
- Small subunit ribosomal RNA; SSU rRNA
- Chain j
- 60S ribosomal protein L2-B
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