IL_8OI5_109

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

8OI5|1|1|A|2913, 8OI5|1|1|C|2914

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_109 not in the Motif Atlas

Homologous match to IL_8C3A_117

Geometric discrepancy: 0.0425

The information below is about IL_8C3A_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8OI5|1|1|C|2853
8OI5|1|1|U|2854
*
8OI5|1|1|A|2912
8OI5|1|1|A|2913
8OI5|1|1|C|2914
8OI5|1|1|G|2915

Current chains

Chain 1

25S

Nearby chains

Chain 6

60S ribosomal protein L23-A

Chain k

60S ribosomal protein L3

Chain w

Ribosomal protein L13