IL_8OI5_111

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

8OI5|1|1|A|2883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_111 not in the Motif Atlas

Homologous match to IL_8C3A_119

Geometric discrepancy: 0.0691

The information below is about IL_8C3A_119

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

8OI5|1|1|U|2863
8OI5|1|1|A|2864
*
8OI5|1|1|U|2881
8OI5|1|1|A|2882
8OI5|1|1|A|2883
8OI5|1|1|G|2884

Current chains

Chain 1

25S

Nearby chains

Chain AN

60S ribosomal protein L40-B

Chain q

60S ribosomal protein L9-B

Chain w

Ribosomal protein L13