IL_8OI5_117

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

8OI5|1|1|C|3064, 8OI5|1|1|C|3065

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_117 not in the Motif Atlas

Homologous match to IL_8C3A_126

Geometric discrepancy: 0.0396

The information below is about IL_8C3A_126

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

Major groove minor groove platform with tHH

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

8OI5|1|1|U|3019
8OI5|1|1|A|3020
8OI5|1|1|A|3021
8OI5|1|1|U|3022
8OI5|1|1|U|3023
*
8OI5|1|1|A|3063
8OI5|1|1|C|3064
8OI5|1|1|C|3065
8OI5|1|1|A|3066

Current chains

Chain 1

25S

Nearby chains

Chain 6

60S ribosomal protein L23-A

Chain 7

60S ribosomal protein L24-A

Chain k

60S ribosomal protein L3