IL_8OI5_122

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

8OI5|1|1|A|3148

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_122 not in the Motif Atlas

Homologous match to IL_8C3A_131

Geometric discrepancy: 0.0764

The information below is about IL_8C3A_131

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8OI5|1|1|G|3147
8OI5|1|1|A|3148
8OI5|1|1|U|3149
*
8OI5|1|1|A|3175
8OI5|1|1|C|3176

Current chains

Chain 1

25S

Nearby chains

Chain 0

60S ribosomal protein L20

Chain AG

60S ribosomal protein L33-A

Chain n

60S ribosomal protein L6

Chain u

60S ribosomal protein L14-B

Chain w

Ribosomal protein L13