IL_8OI5_142

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UA*UCA

Length

5 nucleotides

Bulged bases

8OI5|1|4|C|91

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_142 not in the Motif Atlas

Homologous match to IL_8C3A_152

Geometric discrepancy: 0.0891

The information below is about IL_8C3A_152

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

8OI5|1|4|U|67
8OI5|1|4|A|68
*
8OI5|1|4|U|90
8OI5|1|4|C|91
8OI5|1|4|A|92

Current chains

Chain 4

5.8S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 9

Ribosomal protein L24

Chain AI

Ribosomal protein L29

Chain AK

60S ribosomal protein L37-B

Chain BT

Ribosomal protein L24