IL_8OI5_149

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

8OI5|1|AS|U|146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_149 not in the Motif Atlas

Homologous match to IL_8C3A_007

Geometric discrepancy: 0.0531

The information below is about IL_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8OI5|1|AS|A|122
8OI5|1|AS|U|123
*
8OI5|1|AS|A|143
8OI5|1|AS|G|144
8OI5|1|AS|U|145
8OI5|1|AS|U|146
8OI5|1|AS|G|147
8OI5|1|AS|U|148

Current chains

Chain AS

25S

Nearby chains

Chain AU

5.8S ribosomal RNA; 5.8S rRNA

Chain BC

60S ribosomal protein L8

Chain BI

60S ribosomal protein L15-A